This page collects the publications and presentations of the faculty of the Department of Biological Sciences at the University of Arkansas, Fayetteville.

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Publications from 2022

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Emergence Activity at Hibernacula Differs Among Four Bat Species Affected by White-nose Syndrome, Reilly T. Jackson, Emma V. Wilcox, John M. Zobel, and Riley F. Bernard

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Winter Torpor Expression Varies in Four Bat Species with Differential Susceptibility to White-nose Syndrome, Reilly T. Jackson, Emma V. Willcox, and Riley F. Bernard

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Engineered FGF1 and FGF2 compositions and methods of use thereof, Thallapuranam Krishnaswamy Suresh Kumar, Shilpi Agarwal, Ravi Kumar Gundampati, Srinivas Jayanthi, Tengjiao Wang, Jake Jones, Olivia Kolenc, Ngoc Thien Lam, Isabelle Ishimwe Niyonshuti, Kartik Balachandran, Kyle Quinn, and Jingyi Chen

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SNP-based Breeding for Broiler Resistance to Ascites and Evaluation of Correlated Production Traits, Katie Pepper Lee, Nicholas B. Anthony, Sara K. Orlowski, and Douglas D. Rhoads

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Differentiation and Temperature Adaptation of Pampus Echinogaster Based on Genome-Wide SNPs, Yuan Li, Fangrui Lou, Shigang Liu, Hai Li, Jiali Xiang, Binbin Shan, Longshan Lin, and Xuan Zhuang

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Building Communities of Teaching Practice and Data-driven Open Education Resources with NEON Faculty Mentoring Networks, Kusum Naithani, Megan Jones, and Kristine L. Richmond

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Strain-specific Transcriptional Responses Overshadow Salinity Effects in a Marine Diatom Sampled Along the Baltic Sea Salinity Cline, Eveline Pinseel, Teofil Nakov, Koen Van den Gerge, Kala M. Downey, Kathryn Judy, Olga Kourtchenko, Anke Kremp, Elizabeth C. Ruck, Conny Sjöqvist, Mats Töpel, Anna Godhe, and Andrew J. Alverson

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Evaluating Greenhouse Gas Emissions and Climate Mitigation Goals of the Global Food and Beverage Sector, Megan Reavis, Jenny Ahlen, Joe Rudek, and Kusum Naithani

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Recovery of soil microbial diversity and functions along a tropical montane forest disturbance gradient, Renee Sniegocki, Jessica B. Moon, Abigail L. Rutrough, Jude Gireneus, Jaya Seelan Sathiya Seelan, Michael C. Farmer, David C. Weindorf, and Kusum Naithani

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Climate warming amplifies the frequency of fish mass mortality events across north temperate lakes, Simon P. Tye, Adam M. Siepielski, Andrew Bray, Andrew L. Rypel, Nicholas B.D. Phelps, and Samuel B. Fey

Publications from 2021

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Prescribed Burning Reduces Species Richness of Wood-decay Fungi in the Forests of Northwest Arkansas, N. Alshammari, Thamer H. Albalawi, and Steven Lee Stephenson

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Quantifying Mitochondrial Dynamics in Patient Fibroblasts with Multiple Developmental Defects and Mitochondrial Disorders, Ajibola B. Bakare, Julienne Daniel, Joshua Stabach, Anapaula Rojas, Austin Bell, Brooke Henry, and Shilpa Iyer

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Evaluating the Bioenergetics Health Index Ratio in Leigh Syndrome Fibroblasts to Understand Disease Severity, Ajibola B. Bakare, Joseph Dean, Qun Chen, Vedant Chen, Yimin Huang, Thomas LaFramboise, Edward J. Lesnefsky, and Shilpa Iyer

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Leigh Syndrome: A Tale of Two Genomes, Ajibola B. Bakare, Edward J. Lesnefsky, and Shilpa Iyer

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Cell-Permeable Succinate Increases Mitochondrial Membrane Potential and Glycolysis in Leigh Syndrome Patient Fibroblasts, Ajibola B. Bakare, Raj R. Rao, and Shilpa Iyer

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A Spatially Explicit Model of Stabilizing Selection for Improving Phylogenetic Inference, Jeremy M. Beaulieu, Brian C. O'Meara, and Michael A. Gilchrist

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Simple LAMP PCR design for low resource setting and minimal environmental footprint, Robert Beitle Jr., Christa N. Hestekin, Ahmed K. Ali Elmasheiti, Kimberly Cribbs, Michael Rienisch, Bryce Cameron Jones, Allysa Swearingen, Brandon Hart, Kevin Clark, and Vicki Thompson

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Reduced Toxicity of Centruroides vittatus (Say, 1821) May Result from Lowered Sodium β Toxin Gene Expression and Toxin Protein Production, Aimee Bowman, Chloe Fitzgerald, Jeff Pummill, Douglas D. Rhoads, and Tsunemi Yamashita

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Conserved and Divergent Aspects of Robo Receptor Signaling and Regulation Between Drosophila Robo1 And C. elegans SAX-3, Trant Daiber, Christine J. VanderZwan-Butler, Greg J. Bashaw, and Timonthy A. Evans

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Nine-banded Armadillo (Dasypus novemcinctus) Activity Patterns are Influenced by Human Activity, Brett A. DeGregorio, Connor Gale, Ellery V. Lassiter, Andrhea Darleen Massey, Caleb P. Roberts, and John T. Veon

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Are Populations of Economically Important Bonefish and Queen Conch 'Open' or 'Closed' in the Northern Caribbean Basin?, Marlis R. Douglas, Tyler Chafin, Julie E. Claussen, David P. Philipp, and Michael E. Douglas

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Population Connectivity in Voles (Microtus sp.) as a Gauge for Tall Grass Prairie Restoration in Midwestern North America, Marlis R. Douglas, Steven M. Mussmann, Tyler Chafin, Whitney J.B. Anthonysamy, Mark A. Davis, Matthew P. Mulligan, Robert L. Schooley, Wade Louis, and Michael E. Douglas

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Blood–Brain Barrier Breakdown and Astrocyte Reactivity Evident in the Absence of Behavioral Changes after Repeated Traumatic Brain Injury, Celeste Dunn, Nasya Sturdivant, Sara Venier, Syed Ali, Jeffery Wolchok, and Kartik Balachandran

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Hypoxia Further Exacerbates Woody Breast Myopathy in Broilers Via Alteration of Satellite Cell Fate, Nima K. Emami, Reagan N. Cauble, Ahmed E. Dhamad, Elizabeth S. Greene, Cynthia S. Coy, Sara Orlowski, Nicholas Anthony, Mike R. Bedford, and Sami Dridi

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Stage- and Sex-specific Transcriptome Analyses Reveal Distinctive Sensory Gene Expression Patterns in a Butterfly, David A. Ernst and Erica L. Westerman

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The Importance of Pre- and Postcopulatory Sexual Selection Promoting Adaptation to Increasing Temperatures, Miguel Gomez-Llano, Eve Scott, and Erik I. Svensson

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The Slit-binding Ig1 Domain is Required for Multiple Axon Guidance Activities of Drosophila Robo2, LaFreda J. Howard, Marie C. Reichert, and Timonthy A. Evans

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Northern Bobwhite Occupancy Patterns on Multiple Spatial Scales Across Arkansas, Ellery V. Lassiter, Marcus Asher, Grace Christie, Connor Gale, Andrhea Massey, Cody Massery, Christopher R. Middaugh, John T. Veon, and Brett A. DeGregorio

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Hydrologic Variation Influences Stream Fish Assemblage Dynamics Through Flow Regime and Drought, Daniel D. Magoulick, Matthew P. Dekar, Shawn W. Hodges, Mandy K. Scott, Michael R. Rabalais, and Christopher M. Bare

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ClineHelpR: An R Package for Genomic Cline Outlier Detection and Visualization, Bradley T. Martin, Tyler K. Chafin, Marlis R. Douglas, and Michael E. Douglas

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Migration Phenology and Patterns of American Woodcock in Central North America Derived Using Satellite Telemetry, Joseph D. Moore, David E. Andersen, Tom Cooper, Jeffrey P. Duguay, Shaun L. Oldenburger, C. Al Stewart, and David G. Krementz

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Cnidarian Hair Cell Development Illuminates an Ancient Role for the Class IV POU Transcription Factor in Defining Mechanoreceptor Identity, Ethan Ozment, Arianna N. Tamvacakis, Jianhong Zhou, Pablo Yamild Rosiles-Loeza, Estaban Elias Escobar-Hernandez, Selene L. Fernandez-Valverde, and Nagayasu Nakanishi

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The Saga of Endocrine FGFs, Phuc Phan, Bibhuti Ballav Saikia, Shivakumar Sonnaila, Shilpi Agrawal, Zeina Ismael Ibrahem Alraawi, Thallapuranam Krishnaswamy Suresh Kumar, and Shilpa Iyer

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Geometric morphometric analyses define riverine and lacustrine species flocks of Himalayan snowtrout (Cyprinidae: Schizothorax) in Nepal, Binod Regmi, Marlis R. Douglas, David R. Edds, and Michael E. Douglas

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A Wild Yeast Laboratory Activity: From Isolation to Brewing, Amanda N. Scholes, Erik D. Pollock, and Jeffrey A. Lewis

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RuvB-Like Protein 2 Interacts with the NS1 Protein of Influenza A Virus and Affects Apoptosis That Is Counterbalanced by Type I Interferons, Yimeng Wang, Jianhong Zhou, Samuel G. Mackintosh, and Yuchun Du

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Propagation of a De Novo Gene under Natural Selection: Antifreeze Glycoprotein Genes and Their Evolutionary History in Codfishes, Xuan Zhuang and C.-H. Christina Cheng

Publications from 2020

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Minimal structural elements required for midline repulsive signaling and regulation of Drosophila Robo1, Haley E. Brown and Timonthy A. Evans

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Methanosarcina acetivorans contains a functional ISC system for iron-sulfur cluster biogenesis, Thomas M. Deere, Divya Prakash, Faith H. Lessner, Evert C. Duin, and Daniel J. Lessner

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Defining relictual biodiversity: Conservation units in speckled dace (Leuciscidae: Rhinichthys osculus) of the Greater Death Valley ecosystem, Steven M. Mussmann, Marlis R. Douglas, David D. Oakey, and Michael E. Douglas

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Expression Analysis of Cnidarian-Specific Neuropeptides in a Sea Anemone Unveils an Apical-Organ-Associated Nerve Net That Disintegrates at Metamorphosis, Hannah Zang and Nagayasu Nakanishi

Patents from 2019

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Cleavage resistant photoluminescent proteins and applications thereof, Robert Beitle Jr., Rudra Palash Mukherjee, Thallapuranam Krishnaswamy Suresh Kumar, Joshua Sakon, and David S. McNabb

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Methods and compositions for X-ray induced release from pH sensitive liposomes, Daniel Fologea, Ralph Henry, Greg J. Salamo, Yuriy Mazur, and Michael J. Borrelli

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Heparin affinity tag and application thereof, Thallapuranam Krishnaswamy Suresh Kumar, Srinivas Jayanthi, Jacqueline Morris, Alicia D. Brown, David S. McNabb, and Ralph Henry

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Engineered FGF compositions and methods of use thereof, Thallapuranam Krishnaswamy Suresh Kumar, David A. Zaharoff, Srinivas Jayanthi, Bhanuprasanth Koppolu, Rebecca Kerr, Kartik Balachandran, and David S. McNabb

Patents from 2018

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Separatome-based protein expression and purification platform, Ellen M. Brune, Robert Beitle Jr., Mohammad M. Ataai, Patrick R. Bartlow, and Ralph Henry

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CRISPR Knockouts Reveal an Endogenous Role for Ancient Neuropeptides in Regulating Developmental Timing in a Sea Anemone, Nagayasu Nakanishi and Mark Q. Martindale

Patents from 2017

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E. coli separatome-based protein expression and purification platform, Ellen M. Brune, Robert Beitle Jr., Mohammad M. Ataai, Patrick R. Bartlow, and Ralph Henry

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Separatome-based protein expression and purification platform, Ellen M. Brune, Robert Beitle Jr., Mohammad M. Ataai, Patrick R. Bartlow, and Ralph Henry

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Methods and compositions for X-ray induced release from pH sensitive liposomes, Daniel Fologea, Ralph Henry, Greg J. Salamo, Yuriy Mazur, and Michael J. Borrelli