This page collects the publications and presentations of the faculty of the Department of Chemistry and Biochemistry at the University of Arkansas, Fayetteville.

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Accepted Manuscripts

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Evaluating N-benzylgalactonoamidines as putative transition state analogs for β-galactoside hydrolysis, Qui-Hua Fan, Susanne Striegler, Rebekah Langston, and James Barnett

Articles

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In Situ and 2D and 3D in Silico Redox Cycling Studies for Design Optimization of Coplanar Arrays of Microband Electrodes in a 70 μm × 100 μm Electroactive Footprint, Miguel Angel Abrego Tello, Mahsa Lotfi Marchoubeh, and Ingrid Fritsch

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Modeling Charging Current Dynamics at Microelectrodes and their Interfaces with Electrolyte and Insulators with a Focus on Microfabricated Gold Microband Electrodes on an SU-8 Substrate, Miguel Angel Abrego Tello, Mahsa Lotfi Marchoubeh, and Ingrid Fritsch

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Thymosin β4 Dynamics During Chicken Enteroid Development, Mohan Acharya, Rohana Liyanage, Anamika Gupta, Komala Arsi, Ann M. Donoghue, Jackson O. Lay Jr., and Narayan Rath

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Flexible and Sewable Electrode Based on Ni-Co@PANI-salphen Composite-Coated on Textiles for Wearable Supercapacitor, Touba Rezaee Adriyani, Ali A. Ensafi, and B. Rezaei

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Characterization of the Structural Forces Governing the Reversibility of the Thermal Unfolding of the Human Acidic Fibroblast Growth Factor, Shilpi Agrawal, Vivek Govind Kumar, Ravi Kumar Gundampati, Mahmoud Moradi, and Thallapuranam Krishnaswamy Suresh Kumar

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Cellulose–Starch Composite Aerogels as Thermal Superinsulating Materials, Safoura Ahmadzadeh, Angelina Sagardui, David Huitink, Jingyi Chen, and Ali Ubeyitogullari

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Recombinant Bile Salt Hydrolase Enhances the Inhibition Efficiency Of Taurodeoxycholic Acid Against Clostridium perfringens Virulence, Tahrir Alenezi, Bilal Alrubaye, Ying Fu, Janashrit Shrestha, Samar Algehani, Hong Wang, Rohana Liyanage, and Xiaolun Sun

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Development of Biodegradable/Biocompatible Nanoliposome-Encapsulated Antimicrobial Essential Oils for Topical Creams and Gels, Israa Al-Ogaidi, Zoraida P. Aguilar, and Jackson O. Lay Jr.

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Studying Acetylation of Aconitase Isozymes by Genetic Code Expansion, Jessica Araujo, Sara Ottinger, Sumana Venkat, Qinglei Gan, and Chenguang Fan

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The Alternating Access Mechanism in Mammalian Multidrug Resistance Transporters and Their Bacterial Homologs, Shadi A. Badiee, Ugochi H. Isu, Ehsaneh Khodadadi, and Mahmoud Moradi

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Molecular Dynamics Investigation of the Influenza Hemagglutinin Conformational Changes in Acidic pH, Shadi A. Badiee, Vivek Govind Kumar, and Mahmoud Moradi

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Specific Secondary Bile Acids Control Chicken Necrotic Enteritis, Mohit Bansal, Tahrir Jatli Alenezi, Ying Fu, Ayidh Almansour, Hong Wang, Anamika Gupta, Rohana Liyanage, Danielle B. Graham, Billy Hargis, and Xiaolun Sun

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Understanding and Tuning Magnetism in Layered Ising-type Antiferromagnet FePSe3 for Potential 2D Magnet, Rabindra Basnet, Taksh Patel, Jian Wang, Dinesh Upreti, Santosh Karki Chhetri, Gokul Acharya, Md Rafique Un Nabi, Joshua Sakon, and Jin Hu

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cpSRP43 Is Both Highly Flexible and Stable: Structural Insights Using a Combined Experimental and Computational Approach, Mitchell Benton, Mercede Furr, Vivek Govind Kumar, Adithya Polasa, Feng Gao, Colin David Heyes, Thallapuranam Krishnaswamy Suresh Kumar, and Mahmoud Moradi

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Genome-Wide Screening of Oxidizing Agent Resistance Genes in Escherichia coli, Hao Chen, Jessica Wilson, Carson Ercanbrack, Hannah Smith, Qinglei Gan, and Chenguang Fan

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Next-Generation Nanopore Sensors Based on Conductive Pulse Sensing for Enhanced Detection of Nanoparticles, Samuel Confederat, Seungheon Lee, Derr Vang, Dimitrios Soulias, Fabio Marcuccio, Timotheus I. Peace, Martin Andrew Edwards, Pietro Strobbia, Devleena Samanta, Christoph Wälti, and Paolo Actis

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A Meta-Analysis of the Protein Components in Rattlesnake Venom, Anant Deshwal, Phuc Phan, Jyotishka Datta, Ragupathy Kannan, and Suresh Kumar Thallapuranam

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Decoding FGF/FGFR Signaling: Insights into Biological Functions and Disease Relevance, Oshadi Edirisinghe, Gaetane Ternier, Zeina Alraawi, and Thallapuranam Krishnaswamy Suresh Kumar

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Facile Synthesis of NiTe2-Co2Te2@rGO Nanocomposite for High-performance Hybrid Supercapacitor, Maziar Farshadnia, Ali A. Ensafi, Kimia Zarean Mousaabadi, Behzad Rezaei, and Muslum Demir

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Modifications of Cellulose-based Biomaterials for Biomedical Applications, Nour Fatema, Ruben Michael Ceballos, and Chenguang Fan

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Addressing the Embeddability Problem in Transition Rate Estimation, Curtis Goolsby, James Losey, Ashkan Fakharzadeh, Yuchen Xu, Marie-Christine Düker, Mila Getmansky Sherman, David S. Matteson, and Mahmoud Moradi

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Visible-Light Photocatalyzed Cross-Linking of Diacetylene Ligands by Quantum Dots to Improve Their Aqueous Colloidal Stability, Marion G. Götz, Hiroko Takeuchi, Matthew J. Goldfogel, Julia M. Warren, Brandon D. Fennel, and Colin D. Heyes

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Engineering Central Substitutions in Heptamethine Dyes for Improved Fluorophore Performance, Lei Guo, Meek Yang, Bin Dong, Seth Lewman, Alex Van Horn, and Shang Jia

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Sodium Butyrate Modulates Chicken Macrophage Proteins Essential for Salmonella Enteritidis Invasion, Anamika Gupta, Mohit Bansal, Rohana Liyanage, Abhinav Upadhyay, Narayan Rath, Annie Donoghue, and Xiaolun Sun

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Advancing CRISPR-Based Solutions for COVID-19 Diagnosis and Therapeutics, Roaa Hadi, Abhishek Poddar, Shivakuma Sonnaila, Venkata Suryanarayana Murthy Bhavaraju, and Shilpi Agrawal

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Probe Metal Binding Mode of Imine Covalent Organic Frameworks: Cycloiridation for (Photo)catalytic Hydrogen Evolution from Formate, Jiyun Hu, Hamed Mehrabi, Yin-Shan Meng, Maddison Taylor, Jin-Hui Zhan, Qigeng Yan, Mourad Benamara, Robert H. Coridan, and Hudson Beyzavi

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Elucidating the Molecular Basis of Spontaneous Activation in an Engineered Mechanosensitive Channel, Kalyan Immadisetty, Adithya Polasa, Reid Shelton, and Mahmoud Moradi

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Cholesterol in Class C GPCRs: Role, Relevance, and Localization, Ugochi H. Isu, Shadi A. Badiee, Ehsaneh Khodadadi, and Mahmoud Moradi

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Differential Behavior of Conformational Dynamics in Active and Inactive States of Cannabinoid Receptor 1, Ugochi H. Isu, Adithya Polasa, and Mahmoud Moradi

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Polyphenol-Induced Protein Structural Modifications in Sorghum on Pasting Properties, Annegret Jannasch, Ya-Jane Wang, Sun-Ok Lee, Rohana Liyanage, Zeina Alraawi, Suresh Kumar Thallapuranam, and William L. Rooney

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Photothermal Response Induced by Nanocage-Coated Artificial Extracellular Matrix Promotes Neural Stem Cell Differentiation, Seunghyun Jung, Nathaniel Harris, Isabelle I. Niyonshuti, Samir V. Jenkins, Abdallah M. Hayar, Fumiya Watanabe, Azemat Jamshidi-Parsian, Jingyi Chen, Michael J. Borrelli, and Robert J. Griffin

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A New Analysis Method for Evaluating Bacterial Growth with Microplate Readers, Venkata Rao Krishnamurthi, Isabelle I. Niyonshuti, Jingyi Chen, and Yong Wang

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Prefusion Spike Protein Conformational Changes are Slower in SARS-CoV-2 than in SARS-CoV-1, Vivek Govind Kumar, Dylan S. Ogden, Ugochi H. Isu, Adithya Polasa, James Losey, and Mahmoud Moradi

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Cyclic and Acyclic Acetals as Safe, Nonaqueous Formaldehyde Equivalents for the Synthesis of Pillararenes, Babitha Machireddy and Maggie He

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Mechanistic Study of the Conductance and Enhanced Single-Molecule Detection in a Polymer-Electrolyte Nanopore, Fabio Marcuccio, Dimitrios Soulias, Chalmers C.C. Chau, Sheena E. Radford, Eric Hewitt, Paolo Actis, and Martin Andrew Edwards

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Understanding Diffusion and Electrochemical Reduction of Li+ Ions in Liquid Lithium Metal Batteries, Witness Martin, Yang Tian, and Jie Xiao

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Lipid-dependent Titration of Glutamic Acid at a Bilayer Membrane Interface, Matthew J. McKay, Kelsey A. Marr, Jake R. Price, Denise V. Greathouse, and Roger E. Koeppe II

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Dual Ni/Co-hemin Metal-organic Framework-PrGO for High-performance Asymmetric Hybrid Supercapacitor, Kimia Zarean Mousaabadi, Ali A. Ensafi, Erfan Naghsh, Jin-Song Hu, and Behzad Rezaei

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Visible light mediated intermolecular [3 + 2] annulation of cyclopropylanilines with alkynes, Theresa H. Nguyen, Soumitra Maity, and Nan Zheng

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Simulation of Linear and Cyclic Alkanes with Second-Order Møller–Plesset Perturbation Theory through Adaptive Force Matching, Alexei Nikitin and Feng Wang

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Stability of Polyethylene Glycol-Coated Copper Nanoparticles and Their Optical Properties, Deborah Okyere, Ryan H. Manso, Xiao Tong, and Jingyi Chen

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A Review of Rattlesnake Venoms, Phuc Phan, Anant Deshwal, Tyler Anthony McMahon, Matthew Slikas, Elodie Andrews, Brian Becker, and Thallapuranam Krishnaswamy Suresh Kumar

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The Saga of Endocrine FGFs, Phuc Phan, Bibhuti Ballav Saikia, Shivakumar Sonnaila, Shilpi Agrawal, Zeina Ismael Ibrahem Alraawi, Thallapuranam Krishnaswamy Suresh Kumar, and Shilpa Iyer

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Deciphering the Interdomain Coupling in a Gram-Negative Bacterial Membrane Insertase, Adithya Polasa, Shadi A. Badiee, and Mahmoud Moradi

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An Investigation of the YidC-mediated Membrane Insertion of Pf3 Coat Protein Using Molecular Dynamics Simulations, Adithya Polasa, Jeevapani Hettige, Kalyan Immadisetty, and Mahmoud Moradi

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Developing a Rational Approach to Designing Recombinant Proteins for Peptide-directed Nanoparticle Synthesis, Adithya Polasa, Imann Mosleh, James Losey, Alireza Abbaspourrad, Robert Beitle, and Mahmoud Moradi

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Guar-Based Injectable Hydrogel for Drug Delivery and In Vitro Bone Cell Growth, Humandra Poudel, Ambar R. RanguMagar, Pooja Singh, Adeolu Oluremi, Nawab Ali, Fumiya Watanabe, Joseph Batta-Mpouma, Jin-Woo Kim, Ahona Ghosh, and Anindya Ghosh

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Illuminating Disorder Induced by Glu in a Stable Arg-anchored Transmembrane Helix, Jake R. Price, Fahmida Afrose, Denise V. Greathouse, and Roger E. Koeppe II

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Ambient-Pressure Ozone Treatment Enables Tuning of Oxygen Vacancy Concentration in the La1−xSrxFeO3−δ (0 ≤ x ≤ 1) Perovskite Oxide, Geletu Qing, David Thompson, Mourad Benamara, Clemes Heske, Lauren Greenlee, and Jingyi Chen

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The Shape Modulation of Laser-Induced Nanowelded Microstructures Using Two Colors, Ariel Rogers, Isabelle Niyonshuti, Jun Ou, Diksha Shrestha, Deborah Okyere, Jingyi Chen, and Yong Wang

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The Bactericidal Activity of a Novel Aneurinibacillus aneurinilyticus Isolate Effectively Controls Foodborne Pathogens Campylobacter jejuni and Listeria monocytogenes, Peter M. Rubinelli, Rohana Liyanage, Jackson Lay, and Jennifer C. Acuff

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Silver Ions Inhibit Bacterial Movement and Stall Flagellar Motor, Benjamin Russell, Ariel Rogers, Ryan Yoder, Matthew Kurilich, Venkata Rao Krishnamurthi, Jingy Chen, and Yong Wang

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H-CoNiSe2/NC Dodecahedral Hollow Structures for High-performance Supercapacitors, P. Salehan, Ali A. Ensafi, Z. Andikaey, and B. Rezaei

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Ins and Outs of Rocker Switch Mechanism in Major Facilitator Superfamily of Transporters, Stephanie Sauve, Joseph Williamson, Adithya Polasa, and Mahmoud Moradi

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Single Particle Electrochemical Oxidation of Polyvinylpyrrolidone-Capped Silver Nanospheres, Nanocubes, and Nanoplates in Potassium Nitrate and Potassium Hydroxide Solutions, Jazlynn C. Sikes, Isabelle I. Niyonshuti, Kannasoot Kanokkanchana, Jingyi Chen, Kristina Tschulik, and Ingrid Fritsch

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Characterization of Nanoparticles in Diverse Mixtures Using Localized Surface Plasmon Resonance and Nanoparticle Tracking by Dark-Field Microscopy with Redox Magnetohydrodynamics Microfluidics, Jazlynn Sikes, Kevin Wonner, Aaron Nicholson, Paolo Cignoni, Ingrid Fritsch, and Kristina Tschulik

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Developing Catalysts for the Hydrolysis of Glycosidic Bonds in Oligosaccharides Using a Spectrophotometric Screening Assay, Susanna Striegler

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Selective Hydrolysis of Heterooligosaccharides by Poly(acrylate) Gel Catalysts, Susanna Striegler

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Discrimination of chiral copper(II) complexes upon binding of galactonoamidine ligands, Susanne Striegler and Jessica Pickens

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Micro-flow Nanocatalysis: Synergic Effect of TfOH@SPIONs and Micro-flow Technology as an Efficient and Robust Catalytic System for the Synthesis of Plasticizers, Maryam Tashi, Behnaz Shafiee, Yoshie Sakamaki, Ji-Yun Hu, Zachary Heidrick, Ahmad R. Khosropour, and M. Hassan Beyzavi

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Synthesis of Amorphous and Various Phase-Pure Nanoparticles of Nickel Phosphide with Uniform Sizes via a Trioctylphosphine-Mediated Pathway, David Thompson, Adam S. Hoffman, Zachary R. Mansley, Sarah York, Feng Wang, Yimei Zhu, Simon R. Bare, and Jingyi Chen

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Electrocatalytic Redox Neutral [3+2] Annulation of N-cyclopropylanilines and Alkenes, Qi Wang, Qile Wang, Yuexiang Zhang, Yasmine M. Mohamed, Carlos Pacheco, Nan Zheng, Richard N. Zare, and Hao Chen

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Simulating a Flexible Water Model as Rigid: Best Practices and Lessons Learned, Raymond Weldon and Feng Wang

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Water Potential from Adaptive Force Matching for Ice and Liquid with Revised Dispersion Predicts Supercooled Liquid Anomalies in Good Agreement with Two Independent Experimental Fits, Raymond Weldon and Feng Wang

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Efficient Photocatalytic Core–Shell Synthesis of Titanate Nanowire/rGO, Xiaofang Ye, Yang Tian, Mengyao Gao, Fangjun Cheng, Jinshen Lan, Han Chen, Mark Lanoue, Shengli Huang, and Z. Ryan Tian

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Development and Validation of a DFT-Based Force Field for a Hydrated Homoalanine Polypeptide, Ying Yuan, Zhonghua Ma, and Feng Wang

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Dipole Cooperativity and Polarization Frustration Determine the Secondary Structure Distribution of Short Alanine Peptides in Water, Ying Yuan and Feng Wang

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Performing Molecular Dynamics Simulations and Computing Hydration Free Energies on the B3LYP-D3(BJ) Potential Energy Surface with Adaptive Force Matching: A Benchmark Study with Seven Alcohols and One Amine, Dong Zheng and Feng Wang

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Fragmentation Method for Computing Quantum Mechanics and Molecular Mechanics Gradients for Force Matching: Validation with Hydration Free Energy Predictions Using Adaptive Force Matching, Dong Zheng, Ying Yuan, and Feng Wang

Editorials

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Editorial: Engineering Nucleic Acids-Based Functional Nanomaterials, Nanodrugs, and Biosensors, Jabrane Jouha, Fengli Li, Wen-Ta Su, Chenguang Fan, Dayong Yang, and Hai Xiong

Videos

From 3D printing to digital manufacturing (Analytical Chemistry Seminar, Oct. 9, 2020), Wenchao Zhou